KinshipCorrelationGenerator documentation

Welcome to the KinshipCorrelationGenerator’s documentation!

First time here? Best start at Get started

Contents

• Get started
  • Installing Python
  • Installing dependencies
  • Downloading script
  • Reformatting pedigree
  • Generating correlations
• Generating a reformatted pedigree file
  • Creating the input pedigree file
  • Running the code
• Computing correlations
  • Creating the input data file
  • Generating weighted correlations
  • Generating cross-trait correlations
  • Other common options
• Script arguments
  • -h, –help
  • –morehelp
  • –data
  • –outprefix
  • –extended
  • –pedigree
  • –method
  • –bivar
  • –correct
  • –exclude
  • –raw_n
  • –randomsample
  • –use_repeated_families
  • –longitudinal
  • –surveycompletion
  • Additonal non-argument settings

Indices and tables

• Index

• Module Index