KinshipCorrelationGenerator
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  • Get started
  • Generating a reformatted pedigree file
  • Computing correlations
  • Script arguments
KinshipCorrelationGenerator
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KinshipCorrelationGenerator documentation¶

Welcome to the KinshipCorrelationGenerator’s documentation!

First time here? Best start at Get started

Contents¶

  • Get started
    • Installing Python
    • Installing dependencies
    • Downloading script
    • Reformatting pedigree
    • Generating correlations
  • Generating a reformatted pedigree file
    • Creating the input pedigree file
    • Running the code
  • Computing correlations
    • Creating the input data file
    • Generating weighted correlations
    • Generating cross-trait correlations
    • Other common options
  • Script arguments
    • -h, –help
    • –morehelp
    • –data
    • –outprefix
    • –extended
    • –pedigree
    • –method
    • –bivar
    • –correct
    • –exclude
    • –raw_n
    • –randomsample
    • –use_repeated_families
    • –longitudinal
    • –surveycompletion
    • Additonal non-argument settings

Indices and tables¶

  • Index

  • Module Index

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© Copyright 2020, Matthijs D. van der Zee. Revision 477456dc.

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